Volume 12; Issue 1 Suppleme

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Genome Biology
Volume 12; Issue 1 Suppleme

Genome Biology

Volume 12; Issue 1 Suppleme

1

Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets

Tarway, McAnthony, Tang, Wei, Prokunina-Olsson, Ludmila

Journal:

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

2

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

3

Reconstructing microbial communities

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

4

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

5

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

6

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

7

Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

8

Next-generation clinical sequencing in a children’s hospital

Stephen Kingsmore

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

9

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

10

Reconstructing microbial communities

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

11

Interrogating the architecture of cancer genomes

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

12

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

13

Next-generation clinical sequencing in a children’s hospital

Stephen Kingsmore

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

14

Abstract withdrawn: Abstract not submitted for online publication

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

15

Interrogating the architecture of cancer genomes

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

16

Integrating GWAS with gene expression data to dissect the genetic architecture of triple-negative breast cancer

Chindo Hicks, Ranjit Kumar, Antonio Pannuti, Lucio Miele

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

17

Timing chromosomal abnormalities using mutation data

Steffen Durinck, Christine Ho, Nicholas J Wang, Wilson Liao…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

18

Genomes or exomes: evaluation of cost, time and coverage

Sumit Middha, Jeanne L Theis, Adele H Goodloe, Timothy M Olson…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

19

The Joint Center for Structural Genomics: exploration of the human gut microbiome

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

20

Genetic basis of common human disease: insight into the role of nonsynonymous SNPs from genome-wide association studies

Lipika R Pal, John Moult

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

21

An amalgamated risk estimation model (REM) and assay integration into future REMs

Peter Cartwright, Erica Ramos, India Bradley, Eric Hanson

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

22

On using optical maps for genome assembly

Henry Lin, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

23

Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

Tejasvi S Niranjan, Abby Adamczyk, Hector Corrada Bravo, Margaret A Taub…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

24

Timing chromosomal abnormalities using mutation data

Steffen Durinck, Christine Ho, Nicholas J Wang, Wilson Liao…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

25

Genomes or exomes: evaluation of cost, time and coverage

Sumit Middha, Jeanne L Theis, Adele H Goodloe, Timothy M Olson…

Journal:

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

26

Microbial community function and biomarker discovery in the human microbiome

Nicola Segata, Sahar Abubucker, Johannes Goll, Alyxandria M Schubert…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

27

Genetic basis of common human disease: insight into the role of nonsynonymous SNPs from genome-wide association studies

Lipika R Pal, John Moult

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

28

Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

Tejasvi S Niranjan, Abby Adamczyk, Hector Corrada Bravo, Margaret A Taub…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

29

The mechanisms and possible significance of upregulation of stomatin expression by hypoxia and/or glucocorticoids

Ji-Cheng Chen, Hao-Yu Cai, Yan Wang, Yuan-Yuan Ma, Liang-Nian Song…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

30

Metabolic pathways are affected differently inSaccharomyces cerevisiaethiol peroxidase mutants during redox stress with hydrogen peroxide

Amy L Olex, Brian M Westwood, Leslie B Poole, Jacquelyn S Fetrow

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

31

A comprehensive census of horizontal gene transfers from prokaryotes to unikonts

Pere Puigbò, Sergei Mekhedov, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

32

Microbial community function and biomarker discovery in the human microbiome

Nicola Segata, Sahar Abubucker, Johannes Goll, Alyxandria M Schubert…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

33

Evolutionary and functional relationships revealed by thedharegulon predicted by genomic context analysis

Marinalva Martins-Pinheiro, Wanessa Cristina Lima, Cláudio A Oller…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

34

Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling

Patricia Porter-Gill, Yi-Ping Fu, Alpana Kaushiva, Douglas Price…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

35

Building a protein interaction (PIN) database for autism candidate genes

Catherine Croft Swanwick, Sharmila Banerjee-Basu

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

36

RNA-Seq methods for imperfect samples: development, evaluation and applications

Xian Adiconis, Lin Fan, David DeLuca, Andrey Sivachenko, Nathalie Pochet…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

37

Metabolic pathways are affected differently inSaccharomyces cerevisiaethiol peroxidase mutants during redox stress with hydrogen peroxide

Amy L Olex, Brian M Westwood, Leslie B Poole, Jacquelyn S Fetrow

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

38

A comprehensive census of horizontal gene transfers from prokaryotes to unikonts

Pere Puigbò, Sergei Mekhedov, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

39

Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets

McAnthony Tarway, Wei Tang, Ludmila Prokunina-Olsson

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

40

COSMIC: the catalogue of somatic mutations in cancer

Nidhi Bindal, Simon A Forbes, David Beare, Prasad Gunasekaran…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

41

Viral diversity in children with diarrhea in Gambia

Irina Astrovskaya, Bo Liu, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

42

Analysis of 2,440 human exomes highlights the evolution and functional impact of rare coding variation

Journal:

Year:

2011

Language:

english

File:

PDF, 356 KB

english, 2011

43

Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling

Patricia Porter-Gill, Yi-Ping Fu, Alpana Kaushiva, Douglas Price…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

44

Building a protein interaction (PIN) database for autism candidate genes

Catherine Croft Swanwick, Sharmila Banerjee-Basu

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

45

The mutation spectrum in Indian patients with Gaucher disease

Vartika Bisariya, Pramod K Mistry, Jun Liu, Madhumita Roy Chaudhari…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

46

Phylogenomics of prokaryotic ribosomal proteins

Natalya Yutin, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

47

Evaluating short-read sequence data from the highly redundant, novel transcriptome ofPolarella glacialis

Theodore R Gibbons, Gregory T Concepcion, Tsvetan R Bachvaroff…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

48

Are clinical genomes already becoming semi-routine for patient care?

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

49

Progress in understanding the human microbiome

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

50

Functional exploration ofCCNE1splicing forms as a possible link to bladder cancer susceptibility

Indu Kohaar, Alexandra Scott-Johnson, Yi-Ping Fu, Patricia Porter-Gill…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

51

Genome-forward oncology: how do we get there?

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

52

Metatranscriptomics of the human gut microbiome

Thomas Sichertz Pontén

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

53

The mutation spectrum in Indian patients with Gaucher disease

Vartika Bisariya, Pramod K Mistry, Jun Liu, Madhumita Roy Chaudhari…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

54

Phylogenomics of prokaryotic ribosomal proteins

Natalya Yutin, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

55

Introducing the non-B DNA Motif Search Tool (nBMST)

Regina Z Cer, Kevin H Bruce, Duncan E Donohue, Alpay N Temiz…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

56

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

David M Kristensen, Arcady R Mushegian, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

57

Microbial reference genomes for human metagenomics

Sarah K Highlander

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

58

Comparative analysis of the vaginal microbiome in health and disease

Bryan A White, Andres M Gomez, Mengfei Ho, Margret Berg Miller…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

59

RNA-Seq-based transcriptional map of the bovine respiratory disease pathogenHistophilus somni2336

Ranjit Kumar, Mark L Lawrence, James Watt, Amanda Cooksey…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

60

Metatranscriptomics of the human gut microbiome

Thomas Sichertz Pontén

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

61

Introducing the non-B DNA Motif Search Tool (nBMST)

Regina Z Cer, Kevin H Bruce, Duncan E Donohue, Alpay N Temiz…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

62

G-CODE: enabling systems medicine through innovative informatics

Subha Madhavan, Yuriy Gusev, Michael A Harris, David M Tanenbaum…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

63

Utilizing whole genome sequences to study population genomics of gene networks: a case study of theArabidopsis thalianaimmune-signaling network

Mridu Middha, Yungil Kim, Peter Morrell, Chad Myers, Fumiaki Katagiri

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

64

Comparative analysis of the vaginal microbiome in health and disease

Bryan A White, Andres M Gomez, Mengfei Ho, Margret Berg Miller…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

65

Novel purification reagents for the study of the human microbiome

George R Feehery, Eileen Dimalanta, Sriharsa Pradhan

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

66

RNA-Seq-based transcriptional map of the bovine respiratory disease pathogenHistophilus somni2336

Ranjit Kumar, Mark L Lawrence, James Watt, Amanda Cooksey…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

67

Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors

Amin A Momin, Brian P James, Thomas C Motter, Humam N Kadara, Garth Powis…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

68

G-CODE: enabling systems medicine through innovative informatics

Subha Madhavan, Yuriy Gusev, Michael A Harris, David M Tanenbaum…

Journal:

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

69

Utilizing whole genome sequences to study population genomics of gene networks: a case study of theArabidopsis thalianaimmune-signaling network

Mridu Middha, Yungil Kim, Peter Morrell, Chad Myers, Fumiaki Katagiri

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

70

A comprehensive transcriptomic and biochemical evaluation of a differentiation inducing anti-leukemic principle isolated fromMomordica charantia

Punit Prabha, Aparna Dixit

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

71

Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors

Amin A Momin, Brian P James, Thomas C Motter, Humam N Kadara, Garth Powis…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

72

A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

Xiaoyu Liu, Sumit Middha, Steven Hart, Asha Nair, Ahmed Hadad…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

73

Prostate stem cell antigen (PSCA) and risk of bladder cancer: linking genotypes to functional mechanisms

Adam Mumy, Indu Kohaar, Patricia Porter-Gill, Wei Tang, Yi-Ping Fu…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

74

A comprehensive transcriptomic and biochemical evaluation of a differentiation inducing anti-leukemic principle isolated fromMomordica charantia

Punit Prabha, Aparna Dixit

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

75

Metastats: an improved statistical method for analysis of metagenomic data

Joseph N Paulson, Mihai Pop, Hector Corrada Bravo

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

76

A genetic survival network for glioblastoma multiforme

Andy Lin, Desmond J Smith

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

77

A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

Xiaoyu Liu, Sumit Middha, Steven Hart, Asha Nair, Ahmed Hadad…

Journal:

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

78

Prostate stem cell antigen (PSCA) and risk of bladder cancer: linking genotypes to functional mechanisms

Adam Mumy, Indu Kohaar, Patricia Porter-Gill, Wei Tang, Yi-Ping Fu…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

79

Whole transcriptome sequencing of normal and tumor bladder tissue samples

Wei Tang, Ludmila Prokunina-Olsson

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

80

Viral diversity in children with diarrhea in Gambia

Irina Astrovskaya, Bo Liu, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

81

RNA-Seq methods for imperfect samples: development, evaluation and applications

Xian Adiconis, Lin Fan, David DeLuca, Andrey Sivachenko, Nathalie Pochet…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

82

A glimpse at tumor genome evolution

Elaine R Mardis

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

83

Metastats: an improved statistical method for analysis of metagenomic data

Joseph N Paulson, Mihai Pop, Hector Corrada Bravo

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

84

A genetic survival network for glioblastoma multiforme

Andy Lin, Desmond J Smith

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

85

COSMIC: the catalogue of somatic mutations in cancer

Nidhi Bindal, Simon A Forbes, David Beare, Prasad Gunasekaran…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

86

Characterizing triple-negative breast cancer tumors

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

87

Analysis of 2,440 human exomes highlights the evolution and functional impact of rare coding variation

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

88

Comparative genomic analysis of mouse and human mammary tumors

Charles M Perou

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

89

Whole transcriptome sequencing of normal and tumor bladder tissue samples

Wei Tang, Ludmila Prokunina-Olsson

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

90

Boundary distinction interpretation of microarray data via discrete correlate summation

Brian M Westwood, Amy L Olex, James L Norris, Leslie B Poole…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

91

Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Justin M Zook, Marc Salit

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

92

A glimpse at tumor genome evolution

Elaine R Mardis

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

93

Evaluating short-read sequence data from the highly redundant, novel transcriptome ofPolarella glacialis

Theodore R Gibbons, Gregory T Concepcion, Tsvetan R Bachvaroff…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

94

Are clinical genomes already becoming semi-routine for patient care?

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

95

Next-generation human genetics

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

96

Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Chen-Hsin Yu, John Moult

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

97

InSilico DB: an online platform to collaboratively structure and export publicly available datasets from the Gene Expression Omnibus database

A Coletta, C Molter, R Duqué, D Steenhoff, J Taminau, V de Schaetzen…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

98

Comparative genomic analysis of mouse and human mammary tumors

Charles M Perou

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

99

Functional exploration ofCCNE1splicing forms as a possible link to bladder cancer susceptibility

Indu Kohaar, Alexandra Scott-Johnson, Yi-Ping Fu, Patricia Porter-Gill…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

100

NIAID genomics programs and global health

Maria Y Giovanni

Journal:

Year:

2011

Language:

english

File:

PDF, 311 KB

english, 2011

101

Genome-forward oncology: how do we get there?

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

102

De novomutations in mental retardation

Joris A Veltman

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

103

Boundary distinction interpretation of microarray data via discrete correlate summation

Brian M Westwood, Amy L Olex, James L Norris, Leslie B Poole…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

104

Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Justin M Zook, Marc Salit

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

105

Integrating GWAS with gene expression data to dissect the genetic architecture of triple-negative breast cancer

Chindo Hicks, Ranjit Kumar, Antonio Pannuti, Lucio Miele

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

106

Next-generation human genetics

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

107

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

David M Kristensen, Arcady R Mushegian, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

108

Exome sequencing as a tool to discover genes for heart attack risk and blood lipids

Sekar Kathiresan

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

109

Microbial reference genomes for human metagenomics

Sarah K Highlander

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

110

The Joint Center for Structural Genomics: exploration of the human gut microbiome

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

111

Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Chen-Hsin Yu, John Moult

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

112

InSilico DB: an online platform to collaboratively structure and export publicly available datasets from the Gene Expression Omnibus database

A Coletta, C Molter, R Duqué, D Steenhoff, J Taminau, V de Schaetzen…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

113

An amalgamated risk estimation model (REM) and assay integration into future REMs

Peter Cartwright, Erica Ramos, India Bradley, Eric Hanson

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

114

On using optical maps for genome assembly

Henry Lin, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

115

De novomutations in mental retardation

Joris A Veltman

Journal:

Year:

2011

Language:

english

File:

PDF, 389 KB

english, 2011

116

A novel functional variant in 8q24 is associated with regulation of prostate stem cell antigen (PSCA) gene expression and bladder cancer risk

Yi-Ping Fu, Indu Kohaar, Adam Mumy, Wei Tang, Brian Muchmore…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

117

A computational approach to identify transposable element insertions in cancer cells

Israel T Silva, Daniel G Pinheiro, Wilson A Silva Jr

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

118

Deciphering the reproductive protein-protein interaction network inAnopheles gambiaewithDrosophila melanogasteras a framework

Daniel Achinko, Paul Mireji, Flaminia Catteruccia, Dan Masig

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

119

A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation

Jingwei Jiang, Jun Li, Frederick C Leung

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

120

ScaffViz: visualizing metagenome assemblies

Sergey Koren, Todd Treangen, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

121

A computational approach to identify transposable element insertions in cancer cells

Israel T Silva, Daniel G Pinheiro, Wilson A Silva Jr

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

122

Deciphering the reproductive protein-protein interaction network inAnopheles gambiaewithDrosophila melanogasteras a framework

Daniel Achinko, Paul Mireji, Flaminia Catteruccia, Dan Masig

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

123

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

124

Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency

Alan F Rope, Kai Wang, Rune Evjenth, Jinchuan Xing, Jennifer J Johnston…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

125

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

126

Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency

Alan F Rope, Kai Wang, Rune Evjenth, Jinchuan Xing, Jennifer J Johnston…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

127

An unusual suspect: an uncommon human-specific synonymous coding variant within theUGT1A6gene explains a GWAS signal and protects against bladder cancer

Wei Tang, Yi-Ping Fu, Jonine D Figueroa, Núria Malats…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

128

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Todd J Treangen, Sergey Koren, Irina Astrovskaya, Dan Sommer, Bo Liu…

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

129

A novel functional variant in 8q24 is associated with regulation of prostate stem cell antigen (PSCA) gene expression and bladder cancer risk

Yi-Ping Fu, Indu Kohaar, Adam Mumy, Wei Tang, Brian Muchmore…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

130

An unusual suspect: an uncommon human-specific synonymous coding variant within theUGT1A6gene explains a GWAS signal and protects against bladder cancer

Wei Tang, Yi-Ping Fu, Jonine D Figueroa, Núria Malats…

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

131

A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation

Jingwei Jiang, Jun Li, Frederick C Leung

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

132

ScaffViz: visualizing metagenome assemblies

Sergey Koren, Todd Treangen, Mihai Pop

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

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